PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_016474535.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family MYB_related
Protein Properties Length: 468aa    MW: 48626.3 Da    PI: 9.909
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_016474535.1genomeNCBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding24.37.4e-0875119144
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 
                      r++W++ Ed  l+ av++ G g+W+ I +      Rt+ q+  rw
   XP_016474535.1  75 RKPWSAAEDMELIAAVQKCGEGNWANILKGDFkGDRTASQLSQRW 119
                      789************************984222488888888888 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.93770127IPR017930Myb domain
SuperFamilySSF466891.36E-1271125IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.1E-1371122IPR009057Homeodomain-like
SMARTSM007171.3E-874125IPR001005SANT/Myb domain
PfamPF002491.6E-675119IPR001005SANT/Myb domain
CDDcd116601.95E-1476124No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MLNGSTVEAP LTINIPNGQT SRTGMDNSFH GTSMHGTNIT VPVAVQKQPL ATVAAAEGLD  60
THGLACINLP PRRKRKPWSA AEDMELIAAV QKCGEGNWAN ILKGDFKGDR TASQLSQRWA  120
IIRKRQGTIV GNGSQLSEAQ LAARRAMSLA LNMPMGDNLK AACPISAGVG QNSGAGPSNS  180
SHSVAADFAS GGAQSQHQQD PLSSKPRIVP KKPLPKPNTS PDSMVKVAAV AAGARVATTS  240
NGASLLKTVQ SKSAVQIPRG GPAVKSHVPV STNGLPSNVH FICTGLVSHS TGPSNASRPE  300
TLQVLGHSLK PVSSAVQPSP AGTSSRPNAS AAPDAPTCAP AAELEENTKQ KLLQKSQTTT  360
LSNAQSEKQV GVVGASGDKA LPPQVQQDKL PASSNPFIEK AEDQTSSFGD EVKEDRQDDQ  420
DSVPGIHVQE KLINDTTNPS KALARTENGS TNGSDLNKAP TRNQNGRE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17076PRRKRKP
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0142000.0BT014200.1 Lycopersicon esculentum clone 133377F, mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016474535.10.0PREDICTED: uncharacterized protein LOC107796293
TrEMBLA0A0V0ILC60.0A0A0V0ILC6_SOLCH; Putative ovule protein
STRINGSolyc12g087970.1.10.0(Solanum lycopersicum)
Orthologous Group ? help